IL_5I4L_266

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

5I4L|1|5|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_266 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.4821

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

5I4L|1|5|C|977
5I4L|1|5|G|978
5I4L|1|5|U|979
5I4L|1|5|A|980
5I4L|1|5|U|981
5I4L|1|5|C|982
*
5I4L|1|5|G|1101
5I4L|1|5|A|1102
5I4L|1|5|A|1103
5I4L|1|5|G|1104

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l7

60S ribosomal protein L7-A

Chain m8

60S ribosomal protein L18-A

Chain n9

60S ribosomal protein L29