3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AUU*ACU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_276 not in the Motif Atlas
Homologous match to IL_5TBW_046
Geometric discrepancy: 0.0656
The information below is about IL_5TBW_046
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

5I4L|1|5|A|1120
5I4L|1|5|U|1121
5I4L|1|5|U|1122
*
5I4L|1|5|A|1136
5I4L|1|5|C|1137
5I4L|1|5|U|1138

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain l7
60S ribosomal protein L7-A
Chain n9
60S ribosomal protein L29

Coloring options:


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