IL_5I4L_285

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5I4L|1|5|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_285 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.233

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5I4L|1|5|G|1262
5I4L|1|5|A|1263
5I4L|1|5|G|1264
5I4L|1|5|U|1265
5I4L|1|5|G|1266
*
5I4L|1|5|C|1275
5I4L|1|5|U|1276
5I4L|1|5|C|1277

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12