IL_5I4L_325

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGAAGCG*CGGGU

Length

13 nucleotides

Bulged bases

5I4L|1|5|G|2522, 5I4L|1|5|G|2585, 5I4L|1|5|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|5|A|2520
5I4L|1|5|U|2521
5I4L|1|5|G|2522
5I4L|1|5|A|2523
5I4L|1|5|A|2524
5I4L|1|5|G|2525
5I4L|1|5|C|2526
5I4L|1|5|G|2527
*
5I4L|1|5|C|2583
5I4L|1|5|G|2584
5I4L|1|5|G|2585
5I4L|1|5|G|2586
5I4L|1|5|U|2587

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain l2

60S ribosomal protein L2-A

Chain l8

60S ribosomal protein L8-A

Chain n5

60S ribosomal protein L25