3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AG*CAUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_408 not in the Motif Atlas
Geometric match to IL_4V88_428
Geometric discrepancy: 0.0692
The information below is about IL_4V88_428
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

5I4L|1|6|A|865
5I4L|1|6|G|866
*
5I4L|1|6|C|962
5I4L|1|6|A|963
5I4L|1|6|U|964
5I4L|1|6|U|965

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c3
40S ribosomal protein S13
Chain d2
40S ribosomal protein S22-A
Chain d7
40S ribosomal protein S27-A

Coloring options:


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