IL_5I4L_418

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5I4L|1|6|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_418 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.136

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5I4L|1|6|G|1051
5I4L|1|6|U|1052
5I4L|1|6|G|1053
*
5I4L|1|6|C|1066
5I4L|1|6|C|1067

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d7

40S ribosomal protein S27-A

Chain s1

40S ribosomal protein S1-A