IL_5I4L_439

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_439 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.0541

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5I4L|1|6|G|1540
5I4L|1|6|G|1541
5I4L|1|6|G|1542
5I4L|1|6|A|1543
5I4L|1|6|U|1544
5I4L|1|6|A|1545
*
5I4L|1|6|U|1566
5I4L|1|6|U|1567
5I4L|1|6|C|1568
5I4L|1|6|A|1569
5I4L|1|6|A|1570
5I4L|1|6|C|1571

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c8

40S ribosomal protein S18-A

Chain c9

40S ribosomal protein S19-A