IL_5I4L_477
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCCG*UGA
- Length
- 8 nucleotides
- Bulged bases
- 5I4L|1|5|C|1016, 5I4L|1|5|C|1017
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_477 not in the Motif Atlas
- Homologous match to IL_8C3A_508
- Geometric discrepancy: 0.4781
- The information below is about IL_8C3A_508
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07195.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5I4L|1|5|U|1014
5I4L|1|5|U|1015
5I4L|1|5|C|1016
5I4L|1|5|C|1017
5I4L|1|5|G|1018
*
5I4L|1|5|U|1034
5I4L|1|5|G|1035
5I4L|1|5|A|1036
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l5
- 60S ribosomal protein L5
- Chain m0
- 60S ribosomal protein L10
- Chain m1
- 60S ribosomal protein L11-B
- Chain sM
- Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1
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