IL_5I4L_490

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_490 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.2196

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

5I4L|1|1|A|3163
5I4L|1|1|C|3164
5I4L|1|1|A|3165
5I4L|1|1|C|3166
*
5I4L|1|1|G|3284
5I4L|1|1|C|3285
5I4L|1|1|G|3286
5I4L|1|1|U|3287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains