IL_5I4L_491
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAU*AG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_491 not in the Motif Atlas
- Homologous match to IL_8P9A_397
- Geometric discrepancy: 0.0911
- The information below is about IL_8P9A_397
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_03109.3
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
5I4L|1|2|C|443
5I4L|1|2|C|444
5I4L|1|2|A|445
5I4L|1|2|A|446
5I4L|1|2|U|447
*
5I4L|1|2|A|460
5I4L|1|2|G|461
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D4
- 40S ribosomal protein S24-A
- Chain S4
- 40S ribosomal protein S4-A
- Chain S9
- 40S ribosomal protein S9-A
Coloring options: