IL_5I4L_493

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAAGGA*UUU

Length

10 nucleotides

Bulged bases

5I4L|1|2|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|2|A|1224
5I4L|1|2|U|1225
5I4L|1|2|A|1226
5I4L|1|2|A|1227
5I4L|1|2|G|1228
5I4L|1|2|G|1229
5I4L|1|2|A|1230
*
5I4L|1|2|U|1257
5I4L|1|2|U|1258
5I4L|1|2|U|1259

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C0

40S ribosomal protein S10-A

Chain C2

40S ribosomal protein S12

Chain E1

Ubiquitin-40S ribosomal protein S31