3D structure

PDB id
5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.99 Å

Loop

Sequence
CUACC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IB7_008 not in the Motif Atlas
Homologous match to IL_4LFB_008
Geometric discrepancy: 0.1136
The information below is about IL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

5IB7|1|13|C|132
5IB7|1|13|U|133
5IB7|1|13|A|134
5IB7|1|13|C|135
5IB7|1|13|C|136
*
5IB7|1|13|G|227
5IB7|1|13|A|228
5IB7|1|13|U|229
5IB7|1|13|G|230

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 7I
30S ribosomal protein S16
Chain BI
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 4.4751 s