IL_5IB7_079

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5IB7|1|14|G|801, 5IB7|1|14|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_079 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0987

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5IB7|1|14|G|674
5IB7|1|14|A|675
5IB7|1|14|A|676
5IB7|1|14|A|677
5IB7|1|14|C|678
*
5IB7|1|14|G|799
5IB7|1|14|A|800
5IB7|1|14|G|801
5IB7|1|14|A|802
5IB7|1|14|U|803
5IB7|1|14|A|804
5IB7|1|14|G|805
5IB7|1|14|C|806

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4