IL_5IB7_141

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GUAGGAUAG*CC

Length

11 nucleotides

Bulged bases

5IB7|1|14|U|2113, 5IB7|1|14|U|2118

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_141 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.3885

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5IB7|1|14|G|2110
5IB7|1|14|U|2113
5IB7|1|14|A|2114
5IB7|1|14|G|2115
5IB7|1|14|G|2116
5IB7|1|14|A|2117
5IB7|1|14|U|2118
5IB7|1|14|A|2119
5IB7|1|14|G|2120
*
5IB7|1|14|C|2178
5IB7|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA