IL_5IB7_142

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GGUGGGAG*CGCCGGUGAAUACCACC

Length

25 nucleotides

Bulged bases

5IB7|1|14|U|2167

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|14|G|2120
5IB7|1|14|G|2121
5IB7|1|14|U|2122
5IB7|1|14|G|2123
5IB7|1|14|G|2124
5IB7|1|14|G|2125
5IB7|1|14|A|2126
5IB7|1|14|G|2127
*
5IB7|1|14|C|2161
5IB7|1|14|G|2162
5IB7|1|14|C|2163
5IB7|1|14|C|2164
5IB7|1|14|G|2165
5IB7|1|14|G|2166
5IB7|1|14|U|2167
5IB7|1|14|G|2168
5IB7|1|14|A|2170
5IB7|1|14|A|2171
5IB7|1|14|U|2172
5IB7|1|14|A|2173
5IB7|1|14|C|2174
5IB7|1|14|C|2175
5IB7|1|14|A|2176
5IB7|1|14|C|2177
5IB7|1|14|C|2178

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA