IL_5IB7_164

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAG*CGAGG

Length

25 nucleotides

Bulged bases

5IB7|1|14|U|2797, 5IB7|1|14|C|2798, 5IB7|1|14|A|2799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|14|C|2789
5IB7|1|14|A|2790
5IB7|1|14|C|2791
5IB7|1|14|G|2792
5IB7|1|14|G|2793
5IB7|1|14|C|2794
5IB7|1|14|G|2795
5IB7|1|14|U|2797
5IB7|1|14|C|2798
5IB7|1|14|A|2799
5IB7|1|14|A|2801
5IB7|1|14|G|2802
5IB7|1|14|C|2803
5IB7|1|14|C|2804
5IB7|1|14|G|2805
5IB7|1|14|G|2807
5IB7|1|14|U|2808
5IB7|1|14|A|2809
5IB7|1|14|A|2810
5IB7|1|14|G|2811
*
5IB7|1|14|C|2889
5IB7|1|14|G|2891
5IB7|1|14|A|2892
5IB7|1|14|G|2893
5IB7|1|14|G|2894

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3