IL_5IB7_271

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CAGGGGAGCUCAUUUAAAG*CACUG

Length

24 nucleotides

Bulged bases

5IB7|1|1H|A|1070, 5IB7|1|1H|G|1071, 5IB7|1|1H|C|1072, 5IB7|1|1H|U|1078

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|1H|C|1053
5IB7|1|1H|A|1054
5IB7|1|1H|G|1055
5IB7|1|1H|G|1059
5IB7|1|1H|G|1062
5IB7|1|1H|G|1063
5IB7|1|1H|A|1070
5IB7|1|1H|G|1071
5IB7|1|1H|C|1072
5IB7|1|1H|U|1078
5IB7|1|1H|C|1079
5IB7|1|1H|A|1080
5IB7|1|1H|U|1081
5IB7|1|1H|U|1082
5IB7|1|1H|U|1083
5IB7|1|1H|A|1084
5IB7|1|1H|A|1085
5IB7|1|1H|A|1086
5IB7|1|1H|G|1087
*
5IB7|1|1H|C|1102
5IB7|1|1H|A|1103
5IB7|1|1H|C|1104
5IB7|1|1H|U|1105
5IB7|1|1H|G|1106

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains