IL_5IB7_310

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_310 not in the Motif Atlas

Homologous match to IL_7RQB_083

Geometric discrepancy: 0.0898

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

5IB7|1|1H|C|2085
5IB7|1|1H|U|2086
5IB7|1|1H|G|2087
*
5IB7|1|1H|U|2232
5IB7|1|1H|U|2233
5IB7|1|1H|G|2234

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 3K

Transfer RNA; tRNA

Chain J8

50S ribosomal protein L28