IL_5IB7_316

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_316 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.0584

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

5IB7|1|1H|C|2350
5IB7|1|1H|G|2351
5IB7|1|1H|A|2352
5IB7|1|1H|G|2353
*
5IB7|1|1H|C|2364
5IB7|1|1H|G|2365
5IB7|1|1H|A|2366
5IB7|1|1H|G|2367

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain I8

50S ribosomal protein L27

Chain O8

50S ribosomal protein L33

Chain Q8

50S ribosomal protein L35