IL_5IB7_346

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GAAACCCC*GGGACUGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_346 not in the Motif Atlas

Homologous match to IL_6CZR_360

Geometric discrepancy: 0.1639

The information below is about IL_6CZR_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|13|G|450
5IB7|1|13|A|451
5IB7|1|13|A|452
5IB7|1|13|A|453
5IB7|1|13|C|454
5IB7|1|13|C|455
5IB7|1|13|C|456
5IB7|1|13|C|457
*
5IB7|1|13|G|475
5IB7|1|13|G|476
5IB7|1|13|G|477
5IB7|1|13|A|478
5IB7|1|13|C|479
5IB7|1|13|U|480
5IB7|1|13|G|481
5IB7|1|13|A|482
5IB7|1|13|C|483

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16