IL_5IB7_352

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

UGUAGA*UCCGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|14|U|858
5IB7|1|14|G|859
5IB7|1|14|U|860
5IB7|1|14|A|861
5IB7|1|14|G|862
5IB7|1|14|A|863
*
5IB7|1|14|U|913
5IB7|1|14|C|914
5IB7|1|14|C|915
5IB7|1|14|G|916
5IB7|1|14|A|917
5IB7|1|14|A|918
5IB7|1|14|G|919

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 45

50S ribosomal protein L16

Chain D5

50S ribosomal protein L25

Chain E5

50S ribosomal protein L27