IL_5IB7_359

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CCGAGC*GCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB7_359 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3775

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5IB7|1|14|C|2466
5IB7|1|14|C|2467
5IB7|1|14|G|2468
5IB7|1|14|A|2469
5IB7|1|14|G|2470
5IB7|1|14|C|2471
*
5IB7|1|14|G|2479
5IB7|1|14|C|2480
5IB7|1|14|G|2481
5IB7|1|14|G|2482
5IB7|1|14|C|2483
5IB7|1|14|G|2484

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16