IL_5IB8_017

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1151

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5IB8|1|13|G|409
5IB8|1|13|G|410
5IB8|1|13|A|411
5IB8|1|13|A|412
5IB8|1|13|G|413
5IB8|1|13|A|414
5IB8|1|13|A|415
5IB8|1|13|G|416
*
5IB8|1|13|U|427
5IB8|1|13|G|428
5IB8|1|13|U|429
5IB8|1|13|A|430
5IB8|1|13|A|431
5IB8|1|13|A|432
5IB8|1|13|C|433

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4