IL_5IB8_099

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5IB8|1|14|U|1142, 5IB8|1|14|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_099 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1272

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5IB8|1|14|C|1018
5IB8|1|14|U|1019
5IB8|1|14|A|1020
5IB8|1|14|A|1021
5IB8|1|14|G|1022
5IB8|1|14|U|1023
5IB8|1|14|G|1024
*
5IB8|1|14|C|1140
5IB8|1|14|U|1141
5IB8|1|14|U|1142
5IB8|1|14|A|1142|||A
5IB8|1|14|A|1143
5IB8|1|14|G|1144

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6