3D structure

PDB id
5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.13 Å

Loop

Sequence
UAG*CG
Length
5 nucleotides
Bulged bases
5IB8|1|14|A|1490
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IB8_119 not in the Motif Atlas
Homologous match to IL_7RQB_062
Geometric discrepancy: 0.1635
The information below is about IL_7RQB_062
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

5IB8|1|14|U|1489
5IB8|1|14|A|1490
5IB8|1|14|G|1491
*
5IB8|1|14|C|1499
5IB8|1|14|G|1500

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L2

Coloring options:


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