IL_5IB8_136
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 5IB8|1|14|C|2055, 5IB8|1|14|C|2612, 5IB8|1|14|U|2613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IB8_136 not in the Motif Atlas
- Homologous match to IL_9DFE_079
- Geometric discrepancy: 0.0858
- The information below is about IL_9DFE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70335.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IB8|1|14|A|2054
5IB8|1|14|C|2055
5IB8|1|14|G|2056
5IB8|1|14|A|2057
*
5IB8|1|14|U|2611
5IB8|1|14|C|2612
5IB8|1|14|U|2613
5IB8|1|14|A|2614
5IB8|1|14|U|2615
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L3
- Chain A5
- 50S ribosomal protein L22
- Chain J5
- 50S ribosomal protein L32
Coloring options: