IL_5IB8_155

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5IB8|1|14|G|2576, 5IB8|1|14|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_155 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0598

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5IB8|1|14|C|2510
5IB8|1|14|U|2511
5IB8|1|14|C|2512
*
5IB8|1|14|G|2574
5IB8|1|14|C|2575
5IB8|1|14|G|2576
5IB8|1|14|A|2577
5IB8|1|14|G|2578

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain J5

50S ribosomal protein L32