IL_5IB8_208

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5IB8|1|1G|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_208 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0943

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5IB8|1|1G|G|925
5IB8|1|1G|G|926
5IB8|1|1G|G|927
*
5IB8|1|1G|U|1390
5IB8|1|1G|U|1391

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 4L

mRNA