IL_5IB8_213
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5IB8|1|1G|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IB8_213 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1574
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5IB8|1|1G|U|1052
5IB8|1|1G|G|1053
5IB8|1|1G|C|1054
5IB8|1|1G|A|1055
5IB8|1|1G|U|1056
*
5IB8|1|1G|A|1204
5IB8|1|1G|U|1205
5IB8|1|1G|G|1206
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 22
- 30S ribosomal protein S3
- Chain 4L
- mRNA
- Chain 5A
- 30S ribosomal protein S14 type Z
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