IL_5IB8_220

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_220 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3356

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5IB8|1|1G|C|1259
5IB8|1|1G|C|1260
5IB8|1|1G|A|1261
5IB8|1|1G|C|1262
*
5IB8|1|1G|G|1273
5IB8|1|1G|G|1274
5IB8|1|1G|A|1275
5IB8|1|1G|G|1276

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1B

30S ribosomal protein Thx