IL_5IB8_234

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

5IB8|1|1H|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_234 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.0602

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

5IB8|1|1H|G|81
5IB8|1|1H|G|82
5IB8|1|1H|G|83
5IB8|1|1H|A|84
5IB8|1|1H|G|85
*
5IB8|1|1H|C|97
5IB8|1|1H|G|98
5IB8|1|1H|U|99
5IB8|1|1H|G|101
5IB8|1|1H|G|102
5IB8|1|1H|A|103
5IB8|1|1H|U|104
5IB8|1|1H|C|105

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain G8

50S ribosomal protein L24

Chain K8

50S ribosomal protein L29