3D structure

PDB id
5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.13 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IB8_247 not in the Motif Atlas
Homologous match to IL_5J7L_259
Geometric discrepancy: 0.0505
The information below is about IL_5J7L_259
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

5IB8|1|1H|C|672
5IB8|1|1H|C|673
5IB8|1|1H|G|674
*
5IB8|1|1H|C|806
5IB8|1|1H|U|807
5IB8|1|1H|G|808

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 31
50S ribosomal protein L4
Chain 78
50S ribosomal protein L15

Coloring options:


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