IL_5IB8_253
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 5IB8|1|1H|G|776, 5IB8|1|1H|A|788, 5IB8|1|1H|A|789, 5IB8|1|1H|C|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IB8_253 not in the Motif Atlas
- Geometric match to IL_7RQB_023
- Geometric discrepancy: 0.0829
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5IB8|1|1H|G|775
5IB8|1|1H|G|776
5IB8|1|1H|A|777
*
5IB8|1|1H|U|787
5IB8|1|1H|A|788
5IB8|1|1H|A|789
5IB8|1|1H|C|790
5IB8|1|1H|C|791
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 31
- 50S ribosomal protein L4
- Chain E8
- 50S ribosomal protein L22
- Chain P8
- 50S ribosomal protein L34
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