IL_5IB8_273

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

5IB8|1|1H|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_273 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1594

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5IB8|1|1H|C|1202
5IB8|1|1H|G|1203
5IB8|1|1H|A|1204
5IB8|1|1H|U|1205
5IB8|1|1H|G|1206
*
5IB8|1|1H|U|1240
5IB8|1|1H|A|1241
5IB8|1|1H|A|1242
5IB8|1|1H|G|1243

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15