IL_5IB8_276
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IB8_276 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.0471
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5IB8|1|1H|A|1262
5IB8|1|1H|U|1263
5IB8|1|1H|G|1264
5IB8|1|1H|A|1265
5IB8|1|1H|G|1266
5IB8|1|1H|U|1267
5IB8|1|1H|A|1268
5IB8|1|1H|A|1269
*
5IB8|1|1H|U|2011
5IB8|1|1H|G|2012
5IB8|1|1H|A|2013
5IB8|1|1H|A|2014
5IB8|1|1H|A|2015
5IB8|1|1H|U|2016
5IB8|1|1H|U|2017
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain 98
- 50S ribosomal protein L17
- Chain E8
- 50S ribosomal protein L22
- Chain N8
- 50S ribosomal protein L32
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