IL_5IB8_303

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_303 not in the Motif Atlas

Homologous match to IL_7RQB_076

Geometric discrepancy: 0.0784

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

5IB8|1|1H|G|1933
5IB8|1|1H|C|1934
*
5IB8|1|1H|G|1964
5IB8|1|1H|C|1965
5IB8|1|1H|A|1966
5IB8|1|1H|C|1967

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2K

Transfer RNA; tRNA