IL_5IB8_304
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5IB8|1|1H|A|1938, 5IB8|1|1H|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IB8_304 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1649
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5IB8|1|1H|C|1934
5IB8|1|1H|G|1935
5IB8|1|1H|A|1936
5IB8|1|1H|A|1937
5IB8|1|1H|A|1938
5IB8|1|1H|U|1939
5IB8|1|1H|U|1940
5IB8|1|1H|C|1941
5IB8|1|1H|C|1942
5IB8|1|1H|U|1943
5IB8|1|1H|U|1944
5IB8|1|1H|G|1945
*
5IB8|1|1H|C|1961
5IB8|1|1H|C|1962
5IB8|1|1H|U|1963
5IB8|1|1H|G|1964
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1K
- Transfer RNA; tRNA
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