IL_5IB8_313

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GUGGGAGC*GCGCCGGUGAAAUACCAC

Length

26 nucleotides

Bulged bases

5IB8|1|1H|U|2167, 5IB8|1|1H|A|2170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|1H|G|2121
5IB8|1|1H|U|2122
5IB8|1|1H|G|2123
5IB8|1|1H|G|2124
5IB8|1|1H|G|2125
5IB8|1|1H|A|2126
5IB8|1|1H|G|2127
5IB8|1|1H|C|2128
*
5IB8|1|1H|G|2160
5IB8|1|1H|C|2161
5IB8|1|1H|G|2162
5IB8|1|1H|C|2163
5IB8|1|1H|C|2164
5IB8|1|1H|G|2165
5IB8|1|1H|G|2166
5IB8|1|1H|U|2167
5IB8|1|1H|G|2168
5IB8|1|1H|A|2169
5IB8|1|1H|A|2170
5IB8|1|1H|A|2171
5IB8|1|1H|U|2172
5IB8|1|1H|A|2173
5IB8|1|1H|C|2174
5IB8|1|1H|C|2175
5IB8|1|1H|A|2176
5IB8|1|1H|C|2177

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1