IL_5IB8_346

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GAAC*GGUGCCCCGCGAGGGGAGC

Length

23 nucleotides

Bulged bases

5IB8|1|13|C|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|13|G|1003
5IB8|1|13|A|1004
5IB8|1|13|A|1005
5IB8|1|13|C|1006
*
5IB8|1|13|G|1023
5IB8|1|13|G|1024
5IB8|1|13|U|1025
5IB8|1|13|G|1026
5IB8|1|13|C|1027
5IB8|1|13|C|1028
5IB8|1|13|C|1028|||A
5IB8|1|13|C|1028|||B
5IB8|1|13|G|1029
5IB8|1|13|C|1030
5IB8|1|13|G|1031
5IB8|1|13|A|1032
5IB8|1|13|G|1032|||A
5IB8|1|13|G|1032|||B
5IB8|1|13|G|1033
5IB8|1|13|G|1034
5IB8|1|13|A|1035
5IB8|1|13|G|1036
5IB8|1|13|C|1037

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2E

30S ribosomal protein S3