IL_5IB8_350

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGCUAGGGGGC*GCCUACCAAACC

Length

23 nucleotides

Bulged bases

5IB8|1|14|U|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|14|G|874
5IB8|1|14|G|875
5IB8|1|14|C|876
5IB8|1|14|U|877
5IB8|1|14|A|878
5IB8|1|14|G|879
5IB8|1|14|G|880
5IB8|1|14|G|881
5IB8|1|14|G|882
5IB8|1|14|G|883
5IB8|1|14|C|884
*
5IB8|1|14|G|892
5IB8|1|14|C|893
5IB8|1|14|C|894
5IB8|1|14|U|895
5IB8|1|14|A|896
5IB8|1|14|C|897
5IB8|1|14|C|898
5IB8|1|14|A|899
5IB8|1|14|A|900
5IB8|1|14|A|901
5IB8|1|14|C|902
5IB8|1|14|C|903

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain D5

50S ribosomal protein L25