IL_5IB8_354

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5IB8|1|14|G|1801, 5IB8|1|14|G|1816, 5IB8|1|14|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_354 not in the Motif Atlas

Homologous match to IL_9DFE_070

Geometric discrepancy: 0.0564

The information below is about IL_9DFE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5IB8|1|14|U|1798
5IB8|1|14|G|1799
5IB8|1|14|C|1800
5IB8|1|14|G|1801
5IB8|1|14|A|1802
5IB8|1|14|A|1803
5IB8|1|14|C|1804
*
5IB8|1|14|G|1813
5IB8|1|14|G|1814
5IB8|1|14|A|1815
5IB8|1|14|G|1816
5IB8|1|14|G|1817
5IB8|1|14|U|1818
5IB8|1|14|A|1819
5IB8|1|14|U|1820
5IB8|1|14|A|1821

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA