IL_5IB8_378

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GUUGCCAGC*GGGCACUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|1G|G|1124
5IB8|1|1G|U|1125
5IB8|1|1G|U|1126
5IB8|1|1G|G|1127
5IB8|1|1G|C|1128
5IB8|1|1G|C|1129
5IB8|1|1G|A|1130
5IB8|1|1G|G|1131
5IB8|1|1G|C|1132
*
5IB8|1|1G|G|1142
5IB8|1|1G|G|1143
5IB8|1|1G|G|1144
5IB8|1|1G|C|1145
5IB8|1|1G|A|1146
5IB8|1|1G|C|1147
5IB8|1|1G|U|1148
5IB8|1|1G|C|1149

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 82

30S ribosomal protein S9