IL_5IBB_089
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IBB_089 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1044
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IBB|1|14|C|857
5IBB|1|14|U|858
5IBB|1|14|G|859
5IBB|1|14|U|860
5IBB|1|14|A|861
5IBB|1|14|G|862
*
5IBB|1|14|C|915
5IBB|1|14|G|916
5IBB|1|14|A|917
5IBB|1|14|A|918
5IBB|1|14|G|919
5IBB|1|14|G|920
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 1J
- 5S ribosomal RNA; 5S rRNA
- Chain 45
- 50S ribosomal protein L16
- Chain E5
- 50S ribosomal protein L27
- Chain H5
- 50S ribosomal protein L30
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