IL_5IBB_104

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_104 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0475

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5IBB|1|14|A|1262
5IBB|1|14|U|1263
5IBB|1|14|G|1264
5IBB|1|14|A|1265
5IBB|1|14|G|1266
5IBB|1|14|U|1267
5IBB|1|14|A|1268
5IBB|1|14|A|1269
*
5IBB|1|14|U|2011
5IBB|1|14|G|2012
5IBB|1|14|A|2013
5IBB|1|14|A|2014
5IBB|1|14|A|2015
5IBB|1|14|U|2016
5IBB|1|14|U|2017

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32