IL_5IBB_142

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CCUGUGAACC*GGGAGG

Length

16 nucleotides

Bulged bases

5IBB|1|14|U|2132, 5IBB|1|14|G|2133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IBB|1|14|C|2128
5IBB|1|14|C|2129
5IBB|1|14|U|2130
5IBB|1|14|G|2131
5IBB|1|14|U|2132
5IBB|1|14|G|2133
5IBB|1|14|A|2134
5IBB|1|14|A|2135
5IBB|1|14|C|2136
5IBB|1|14|C|2137
*
5IBB|1|14|G|2155
5IBB|1|14|G|2156
5IBB|1|14|G|2157
5IBB|1|14|A|2158
5IBB|1|14|G|2159
5IBB|1|14|G|2160

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 79

50S ribosomal protein L1