IL_5IBB_163

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAG*CGAGG

Length

25 nucleotides

Bulged bases

5IBB|1|14|U|2797, 5IBB|1|14|C|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IBB|1|14|C|2789
5IBB|1|14|A|2790
5IBB|1|14|C|2791
5IBB|1|14|G|2792
5IBB|1|14|G|2793
5IBB|1|14|C|2794
5IBB|1|14|G|2795
5IBB|1|14|U|2797
5IBB|1|14|C|2798
5IBB|1|14|A|2799
5IBB|1|14|A|2801
5IBB|1|14|G|2802
5IBB|1|14|C|2803
5IBB|1|14|C|2804
5IBB|1|14|G|2805
5IBB|1|14|G|2807
5IBB|1|14|U|2808
5IBB|1|14|A|2809
5IBB|1|14|A|2810
5IBB|1|14|G|2811
*
5IBB|1|14|C|2889
5IBB|1|14|G|2891
5IBB|1|14|A|2892
5IBB|1|14|G|2893
5IBB|1|14|G|2894

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3