IL_5IBB_188

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_188 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1244

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5IBB|1|1G|G|409
5IBB|1|1G|G|410
5IBB|1|1G|A|411
5IBB|1|1G|A|412
5IBB|1|1G|G|413
5IBB|1|1G|A|414
5IBB|1|1G|A|415
5IBB|1|1G|G|416
*
5IBB|1|1G|U|427
5IBB|1|1G|G|428
5IBB|1|1G|U|429
5IBB|1|1G|A|430
5IBB|1|1G|A|431
5IBB|1|1G|A|432
5IBB|1|1G|C|433

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4