IL_5IBB_215
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IBB_215 not in the Motif Atlas
- Geometric match to IL_4LFB_047
- Geometric discrepancy: 0.1314
- The information below is about IL_4LFB_047
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_68118.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
5IBB|1|1G|G|1061
5IBB|1|1G|U|1062
5IBB|1|1G|C|1063
*
5IBB|1|1G|G|1193
5IBB|1|1G|U|1194
5IBB|1|1G|C|1195
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 22
- 30S ribosomal protein S3
- Chain 42
- 30S ribosomal protein S5
- Chain 4L
- mRNA
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain 82
- 30S ribosomal protein S9
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