IL_5IBB_293

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5IBB|1|1H|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_293 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0983

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5IBB|1|1H|C|1686
5IBB|1|1H|G|1687
5IBB|1|1H|U|1688
5IBB|1|1H|A|1689
5IBB|1|1H|A|1690
5IBB|1|1H|C|1691
*
5IBB|1|1H|G|1696
5IBB|1|1H|G|1697
5IBB|1|1H|A|1698
5IBB|1|1H|G|1699
5IBB|1|1H|A|1700
5IBB|1|1H|A|1701
5IBB|1|1H|G|1702

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA