IL_5IBB_295

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5IBB|1|1H|G|1801, 5IBB|1|1H|G|1816, 5IBB|1|1H|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_295 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0521

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5IBB|1|1H|U|1798
5IBB|1|1H|G|1799
5IBB|1|1H|C|1800
5IBB|1|1H|G|1801
5IBB|1|1H|A|1802
5IBB|1|1H|A|1803
5IBB|1|1H|C|1804
*
5IBB|1|1H|G|1813
5IBB|1|1H|G|1814
5IBB|1|1H|A|1815
5IBB|1|1H|G|1816
5IBB|1|1H|G|1817
5IBB|1|1H|U|1818
5IBB|1|1H|A|1819
5IBB|1|1H|U|1820
5IBB|1|1H|A|1821

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA